species:   Rhsol
pid:       PID0494
parent:    Rhi-milR-11
paralog:   
locus:     KB317826.1:16515-16597
matures:   ['ACCAUGGACUGGUCUAGACGGG', 'GUCUAGCCUCGGUUCACUUC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317826.1:16515-16597

18 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

        ************************                 **************************        
AUCUCUCUGACUGUCUAGCCUCGGUUCACUUCGCUCUGAGCGCAAUUCCGAACCAUGGACUGGUCUAGACGGGUCACUUCAUG
.......(((((((((((.(.(((((((.((((...((....))....))))...)))))))).)))))).))))).......
---------------------------------------------------ACCAUGGACUGGUCUAGACGGG---------- l=22 a=0 c
------------GUCUAGCCUCGGUUCACUUC--------------------------------------------------- l=20 a=0 c*
---------------------------------------------------ACCAUGGACUGGUCUAGACGGGUC-------- l=24 a=1 ma
----------CUGUCUAGCCUCGGUUCACUUC--------------------------------------------------- l=22 a=0 ma*

---------------------------------------------------ACCAUGGACUGGUCUAGACGGGU--------- l=23 a=1 
---------------------------------------------------ACCAUGGACUGGUCUAGACGGGUC-------- l=24 a=1 (ma)

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-011
